Syntactic parser for English. Outputs predicate-argument structures. Also outputs base forms for each token. The tool is provided as a UIMA component, which forms part of the in-built library of components provided with the U-Compare platform (see separate META-SHARE record) for building and...
Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies sentences and tokens in plain text. Parts of speech and lemmas are assigned to tokens. Language is automatically identified amongst the supported languages and language-specific ...
Part-of-speech tagger tuned to biomedical text. The tool is provided as a UIMA component, which forms part of the in-built library of components provided with the U-Compare platform (see separate META-SHARE record) for building and evaluating text mining workflows. The U-Compare Workbench (se...
This is a UIMA wrapper for the OpenNLP Sentence Detector tool. It splits English text into individual sentences. The tool forms part of the in-built library of components provided with the U-Compare platform (see separate META-SHARE record) for building and evaluating text mining workflows. ...
Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies biomedical named entities (genes and proteins) in plain text. Also identifies sentences. Tools in workflow: Cafetiere Sentence Splitter (University of Manchester), NEMine (Univ...
The GENIA tagger analyzes English sentences and outputs the base forms, part-of-speech tags, chunk tags, and named entity tags. The tagger is specifically tuned for biomedical text such as MEDLINE abstracts. The tool is provided as a UIMA component, which forms part of the in-built library of...
PhenoCHF is an annotated corpus consisting of documents belonging to two different text types (i.e., narrative reports from electronic health records (EHRs) and literature articles). It is manually annotated by medical doctors with detailed information relating to mentions of phenotype concepts a...
This is a workflow that is designed especially for use in the UIMA-based U-Compare workbench (see separate META-SHARE record). The workflow is in "ucz" format (specific to U-Compare) and can be imported via the "Import Workflow" item in the "Workflows" menu of the U-Compare interface. It include...
The GENIA tagger analyzes English sentences and outputs the base forms, part-of-speech tags, chunk tags, and named entity tags. The tagger is specifically tuned for biomedical text such as MEDLINE abstracts.
In order to construct the inventory, we firstly compiled a species name dictionary by combining all of the names available in Catalogue of Life (CoL), Encyclopedia of Life (EoL) and Global Biodiversity Information Facility (GBIF). The terms contained in this dictionary were then located within ...