PhenoCHF Corpus

PhenoCHF is an annotated corpus consisting of documents belonging to two different text types (i.e., narrative reports from electronic health records (EHRs) and literature articles). It is manually annotated by medical doctors with detailed information relating to mentions of phenotype concepts a...

Resource Type:Corpus
Media Type:Text
Language:English
HIMERA Corpus

The HIMERA annotated corpus contains a set of published historical medical documents that have been manually annotated with semantic information that is relevant to the study of medical history and public health. Specifically, annotations correspond to seven different entity types and two differe...

Resource Type:Corpus
Media Type:Text
Language:English
A Terminological Inventory for Biodiversity

In order to construct the inventory, we firstly compiled a species name dictionary by combining all of the names available in Catalogue of Life (CoL), Encyclopedia of Life (EoL) and Global Biodiversity Information Facility (GBIF). The terms contained in this dictionary were then located within ...

Resource Type:Lexical / Conceptual
Media Type:Text
Language:English
STEPP Tagger

Part-of-speech tagger tuned to biomedical text, provided as a web service.

Resource Type:Tool / Service
Language:English
U-Compare Platform

The purpose of the U-Compare platform is to facilitate easy and rapid development and evaluation of NLP and text mining systems. It includes utilities (including a graphical user interface, the U-Compare workbench, see separate record in META-SHARE) to create workflows from individual, interopera...

Resource Type:Tool / Service
U-Compare Named Entity Recognition service

Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies biomedical named entities (genes and proteins) in plain text. Also identifies sentences. Tools in workflow: Cafetiere Sentence Splitter (University of Manchester), NEMine (Univ...

Resource Type:Tool / Service
Language:English
U-Compare Part-of-Speech Tagging service

Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies tokens in plain text and assigns parts-of-speech Tools in workflow: MLRS POS Tagger web service (University of Malta) NOTE: The licence provided covers the web service only. To...

Resource Type:Tool / Service
Language:Maltese
UIMA/U-Compare Enju parser

Syntactic parser for English. Outputs predicate-argument structures. Also outputs base forms for each token. The tool is provided as a UIMA component, which forms part of the in-built library of components provided with the U-Compare platform (see separate META-SHARE record) for building and...

Resource Type:Tool / Service
Language:English
U-Compare Discourse Parsing Service

Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Performs discourse parsing on plain text. Also identifies sentences, tokens, parts of speech, lemmas, clauses and coreference chains Tools in workflow: UAIC-POSTagger, UAIC-NPChunker, UAI...

Resource Type:Tool / Service
Language:Romanian
U-Compare Segmentation Service

Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies clauses/segments in plain text. Also identifies sentences, tokens, POS tags and lemmas. Tools in workflow: Cafetiere Sentence Splitter (University of Manchester), TTL Tokenizer...

Resource Type:Tool / Service
Language:Romanian