The corpus consists of 1000 MEDLINE abstracts. It is a subset of the original GENIA POS & term corpus, which was selected using the three MeSH terms human, blood cells and transcription factors. In each sentence, three types of information are annotated 1) biomedical terms are identified and assi...
PhenoCHF is an annotated corpus consisting of documents belonging to two different text types (i.e., narrative reports from electronic health records (EHRs) and literature articles). It is manually annotated by medical doctors with detailed information relating to mentions of phenotype concepts a...
This is a workflow that is designed especially for use in the UIMA-based U-Compare workbench (see separate META-SHARE record). The workflow is in "ucz" format (specific to U-Compare) and can be imported via the "Import Workflow" item in the "Workflows" menu of the U-Compare interface. It include...
Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies biomedical named entities (genes and proteins) in plain text. Also identifies sentences. Tools in workflow: Cafetiere Sentence Splitter (University of Manchester), NEMine (Univ...
The HIMERA annotated corpus contains a set of published historical medical documents that have been manually annotated with semantic information that is relevant to the study of medical history and public health. Specifically, annotations correspond to seven different entity types and two differe...
A corpus of 2,000 MEDLINE abstracts, collected using the three MeSH terms human, blood cells and transcription factors. The corpus is available in three formats: 1) A text file containing part-of-speech (POS) annotation, based on the Penn Treebank format, 2) An XML file containing inline POS anno...
The Complex Word (CW) Corpus contains 731 sentences each with one annotated CW. These simplifications were mined from Simple Wikipedia edit histories. Each entry gives an example of a sentence requiring simplification by means of a single lexical edit. This resource is primarily designed for t...
This resource is part of Deliverable 4.6 of the QTLeap FP7 project (Contract number 610516). In its current development (15% of the intended goal of the project), it is composed of 150 sentences (1,416 English tokens and 1,275 Basque tokens). The sentences are excerpts from journalistic text from...
GREC is a semantically annotated corpus of 240 MEDLINE abstracts (167 on the subject of E. coli species and 73 on the subject of the Human species) which is intended for training IE systems and/or resources which are used to extract events from biomedical literature.
ixa-pipe-ned-ukb is a multilingual Named Entity Disambiguation tool. It is based on UKB (http://ixa2.si.ehu.es/ukb/), a graph-based Word Sense Disambiguation tool. The Wikipedia graph built from the hyperlinks between Wikipedia articles is used for the processing. The input of the tool is ...