Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies biomedical named entities (genes and proteins) in plain text. Also identifies sentences. Tools in workflow: Cafetiere Sentence Splitter (University of Manchester), NEMine (Univ...

A corpus of 2,000 MEDLINE abstracts, collected using the three MeSH terms human, blood cells and transcription factors. The corpus is available in three formats: 1) A text file containing part-of-speech (POS) annotation, based on the Penn Treebank format, 2) An XML file containing inline POS anno...

The GENIA tagger analyzes English sentences and outputs the base forms, part-of-speech tags, chunk tags, and named entity tags. The tagger is specifically tuned for biomedical text such as MEDLINE abstracts. The tool is provided as a UIMA component, which forms part of the in-built library of...

The purpose of the tool is to identify gene and protein names in biomedical text. The tool is provided as a UIMA component, which forms part of the in-built library of components provided with the U-Compare platform for building and evaluating text mining workflows. The U-Compare Workbench pr...

The corpus consists of 1000 MEDLINE abstracts. It is a subset of the original GENIA POS & term corpus, which was selected using the three MeSH terms human, blood cells and transcription factors. In each sentence, three types of information are annotated 1) biomedical terms are identified and assi...

LX-NER is a freely available online service for the recognition of expressions for named entities in Portuguese. It was developed and is maintained by the NLX-Natural Language and Speech Group at the University of Lisbon, Department of Informatics. LX-NER takes a segment of Portuguese text an...