The purpose of the tool is to identify gene and protein names in biomedical text. The tool is provided as a UIMA component, which forms part of the in-built library of components provided with the U-Compare platform for building and evaluating text mining workflows. The U-Compare Workbench pr...

The GENIA tagger analyzes English sentences and outputs the base forms, part-of-speech tags, chunk tags, and named entity tags. The tagger is specifically tuned for biomedical text such as MEDLINE abstracts.

MaltParser is a system for data-driven dependency parsing, which can be used to induce a parsing model from treebank data and to parse new data using an induced model. MaltParser is developed by Johan Hall, Jens Nilsson and Joakim Nivre at Växjö University and Uppsala University, Sweden (see Nivr...

Part-of-speech tagger tuned to biomedical text, provided as a web service.

This is a UIMA wrapper for the OpenNLP Tokenizer tool. It assigns part-of-speech tags to tokens in English text. The tagset used in from the Penn Treebank). The tool forms part of the in-built library of components provided with the U-Compare platform (Kano et al., 2009; Kano et al., 2011; see se...

Syntactic parser for English. Outputs dependency relations. Also outputs parts-of-speech for each token. The tool is provided as a UIMA component, specifically as Java archive (jar) file, which can be incorporated within any UIMA workflow. However, it is particularly designed use in the U-Com...

Enju is a syntactic parser for English. The grammar used by the parser is based on Head Driven Phrase Structure Grammar (HPSG). Enju can analyse syntactic/semantic structures of English sentences can output phrase structure and predicate-argument structures.

Treat is a toolkit for natural language processing and computational linguistics in Ruby. The Treat project aims to build a language- and algorithm- agnostic NLP framework for Ruby with support for tasks such as document retrieval, text chunking, segmentation and tokenization, natural language pa...

This is a workflow that is designed especially for use in the UIMA-based U-Compare workbench (see separate META-SHARE record). The workflow is in "ucz" format (specific to U-Compare) and can be imported via the "Import Workflow" item in the "Workflows" menu of the U-Compare interface. It include...

The present tool, that was built to deal with specific issues concerning orthographic conventions adopted for Portuguese, marks sentence boundaries with <s>…</s>, and paragraph boundaries with <p>…</p>. Unwraps sentences split over different lines. A f-score of 99.94% was obtained when testing o...