Part-of-speech tagger tuned to biomedical text, provided as a web service.
Syntactic parser for English. Outputs dependency relations. Also outputs parts-of-speech for each token. The tool is provided as a UIMA component, specifically as Java archive (jar) file, which can be incorporated within any UIMA workflow. However, it is particularly designed use in the U-Com...
Enju is a syntactic parser for English. The grammar used by the parser is based on Head Driven Phrase Structure Grammar (HPSG). Enju can analyse syntactic/semantic structures of English sentences can output phrase structure and predicate-argument structures.
Syntactic parser for English. Outputs predicate-argument structures. Also outputs base forms for each token. The tool is provided as a UIMA component, which forms part of the in-built library of components provided with the U-Compare platform (see separate META-SHARE record) for building and...
The purpose of the tool is to detect sentence boundaries in English text. The tool is provided as a UIMA component, specifically as Java archive (jar) file, which can be incorporated within any UIMA workflow. However, it is particularly designed use in the U-Compare text mining platform (see sepa...
The HIMERA annotated corpus contains a set of published historical medical documents that have been manually annotated with semantic information that is relevant to the study of medical history and public health. Specifically, annotations correspond to seven different entity types and two differe...
In order to construct the inventory, we firstly compiled a species name dictionary by combining all of the names available in Catalogue of Life (CoL), Encyclopedia of Life (EoL) and Global Biodiversity Information Facility (GBIF). The terms contained in this dictionary were then located within ...
Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies biological named entities and disambiguates them according to species, by assigning a species ID from the NCBI taxonomy. Also identifies sentences and tokens. Tools in workflow...
Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies biomedical named entities (genes and proteins) in plain text. Also identifies sentences. Tools in workflow: Cafetiere Sentence Splitter (University of Manchester), NEMine (Univ...
Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies sentences and tokens in plain text. Parts of speech and lemmas are assigned to tokens. Language is automatically identified amongst the supported languages and language-specific ...