UIMA/U-Compare NEMine

The purpose of the tool is to identify gene and protein names in biomedical text. The tool is provided as a UIMA component, which forms part of the in-built library of components provided with the U-Compare platform for building and evaluating text mining workflows. The U-Compare Workbench pr...

Resource Type:Tool / Service
Language:English
UIMA/U-Compare GENIA Tagger

The GENIA tagger analyzes English sentences and outputs the base forms, part-of-speech tags, chunk tags, and named entity tags. The tagger is specifically tuned for biomedical text such as MEDLINE abstracts. The tool is provided as a UIMA component, which forms part of the in-built library of...

Resource Type:Tool / Service
Language:English
U-Compare Workbench

The U-Compare Workbench is a graphical user interface that operates on top of the U-Compare platform. The U-Compare platform allows users to build and evaluate NLP workflows. Workflows consist of one or more components, consisting of corpus readers and tools, such as tokenisers, POS taggers, name...

Resource Type:Tool / Service
U-Compare Type system

The resource constitues of a hierarchically-structured system of data types, which is intended to be suitable for describing the inputs and output annotation types of a wide range of natural language processing applications which operate within the UIMA Framework. It is being developed in conjunc...

Resource Type:Language Description
Media Type:Text
Language:English
U-Compare Species Disambiguation Service

Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies biological named entities and disambiguates them according to species, by assigning a species ID from the NCBI taxonomy. Also identifies sentences and tokens. Tools in workflow...

Resource Type:Tool / Service
Language:English
U-Compare Named Entity Recognition service

Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies biomedical named entities (genes and proteins) in plain text. Also identifies sentences. Tools in workflow: Cafetiere Sentence Splitter (University of Manchester), NEMine (Univ...

Resource Type:Tool / Service
Language:English
Treat

Treat is a toolkit for natural language processing and computational linguistics in Ruby. The Treat project aims to build a language- and algorithm- agnostic NLP framework for Ruby with support for tasks such as document retrieval, text chunking, segmentation and tokenization, natural language pa...

Resource Type:Tool / Service
PhenoCHF Corpus

PhenoCHF is an annotated corpus consisting of documents belonging to two different text types (i.e., narrative reports from electronic health records (EHRs) and literature articles). It is manually annotated by medical doctors with detailed information relating to mentions of phenotype concepts a...

Resource Type:Corpus
Media Type:Text
Language:English
HIMERA Corpus

The HIMERA annotated corpus contains a set of published historical medical documents that have been manually annotated with semantic information that is relevant to the study of medical history and public health. Specifically, annotations correspond to seven different entity types and two differe...

Resource Type:Corpus
Media Type:Text
Language:English
GENIA Tagger

The GENIA tagger analyzes English sentences and outputs the base forms, part-of-speech tags, chunk tags, and named entity tags. The tagger is specifically tuned for biomedical text such as MEDLINE abstracts.

Resource Type:Tool / Service
Language:English