UIMA/U-Compare NEMine

The purpose of the tool is to identify gene and protein names in biomedical text. The tool is provided as a UIMA component, which forms part of the in-built library of components provided with the U-Compare platform for building and evaluating text mining workflows. The U-Compare Workbench pr...

Resource Type:Tool / Service
Language:English
UIMA/U-Compare GENIA Tagger

The GENIA tagger analyzes English sentences and outputs the base forms, part-of-speech tags, chunk tags, and named entity tags. The tagger is specifically tuned for biomedical text such as MEDLINE abstracts. The tool is provided as a UIMA component, which forms part of the in-built library of...

Resource Type:Tool / Service
Language:English
U-Compare Workbench

The U-Compare Workbench is a graphical user interface that operates on top of the U-Compare platform. The U-Compare platform allows users to build and evaluate NLP workflows. Workflows consist of one or more components, consisting of corpus readers and tools, such as tokenisers, POS taggers, name...

Resource Type:Tool / Service
U-Compare Species Disambiguation Service

Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies biological named entities and disambiguates them according to species, by assigning a species ID from the NCBI taxonomy. Also identifies sentences and tokens. Tools in workflow...

Resource Type:Tool / Service
Language:English
U-Compare Platform

The purpose of the U-Compare platform is to facilitate easy and rapid development and evaluation of NLP and text mining systems. It includes utilities (including a graphical user interface, the U-Compare workbench, see separate record in META-SHARE) to create workflows from individual, interopera...

Resource Type:Tool / Service
U-Compare Named Entity Recognition service

Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies biomedical named entities (genes and proteins) in plain text. Also identifies sentences. Tools in workflow: Cafetiere Sentence Splitter (University of Manchester), NEMine (Univ...

Resource Type:Tool / Service
Language:English
GENIA Tagger

The GENIA tagger analyzes English sentences and outputs the base forms, part-of-speech tags, chunk tags, and named entity tags. The tagger is specifically tuned for biomedical text such as MEDLINE abstracts.

Resource Type:Tool / Service
Language:English

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