A Terminological Inventory for Biodiversity

In order to construct the inventory, we firstly compiled a species name dictionary by combining all of the names available in Catalogue of Life (CoL), Encyclopedia of Life (EoL) and Global Biodiversity Information Facility (GBIF). The terms contained in this dictionary were then located within ...

Resource Type:Lexical / Conceptual
Media Type:Text
Language:English
Enju parser

Enju is a syntactic parser for English. The grammar used by the parser is based on Head Driven Phrase Structure Grammar (HPSG). Enju can analyse syntactic/semantic structures of English sentences can output phrase structure and predicate-argument structures.

Resource Type:Tool / Service
Language:English
GENIA Event Corpus with meta-knowledge annotation

The corpus consists of 1000 MEDLINE abstracts. It is a subset of the original GENIA POS & term corpus, which was selected using the three MeSH terms human, blood cells and transcription factors. In each sentence, three types of information are annotated 1) biomedical terms are identified and assi...

Resource Type:Corpus
Media Type:Text
Language:English
GENIA Tagger

The GENIA tagger analyzes English sentences and outputs the base forms, part-of-speech tags, chunk tags, and named entity tags. The tagger is specifically tuned for biomedical text such as MEDLINE abstracts.

Resource Type:Tool / Service
Language:English
HIMERA Corpus

The HIMERA annotated corpus contains a set of published historical medical documents that have been manually annotated with semantic information that is relevant to the study of medical history and public health. Specifically, annotations correspond to seven different entity types and two differe...

Resource Type:Corpus
Media Type:Text
Language:English
PhenoCHF Corpus

PhenoCHF is an annotated corpus consisting of documents belonging to two different text types (i.e., narrative reports from electronic health records (EHRs) and literature articles). It is manually annotated by medical doctors with detailed information relating to mentions of phenotype concepts a...

Resource Type:Corpus
Media Type:Text
Language:English
STEPP Tagger

Part-of-speech tagger tuned to biomedical text, provided as a web service.

Resource Type:Tool / Service
Language:English
Time-sensitive inventory of medical terminology

This inventory contains a set of terms that are relevant to the study of medical history. The inventory is organised as a set of "heading terms", belonging to one of seven different semantic categories, each of which is accompanied by a set of semantically-related terms. There are around 175,0...

Resource Type:Lexical / Conceptual
Media Type:Text
Language:English
U-Compare Apertium Part-of-Speech Tagging Workflow

This is a workflow that is designed especially for use in the UIMA-based U-Compare workbench (see separate META-SHARE record). The workflow is in "ucz" format (specific to U-Compare) and can be imported via the "Import Workflow" item in the "Workflows" menu of the U-Compare interface. It include...

Resource Type:Tool / Service
Languages:Basque
Catalan; Valencian
English
Galician
Portuguese
Spanish; Castilian
U-Compare Cafetiere English Sentence Detector

The purpose of the tool is to detect sentence boundaries in English text. The tool is provided as a UIMA component, specifically as Java archive (jar) file, which can be incorporated within any UIMA workflow. However, it is particularly designed use in the U-Compare text mining platform (see sepa...

Resource Type:Tool / Service
Language:English