Web service created by exporting UIMA-based workflow from the U-Compare text mining system. Functionality: Identifies biomedical named entities (genes and proteins) in plain text. Also identifies sentences. Tools in workflow: Cafetiere Sentence Splitter (University of Manchester), NEMine (Univ...

The GENIA tagger analyzes English sentences and outputs the base forms, part-of-speech tags, chunk tags, and named entity tags. The tagger is specifically tuned for biomedical text such as MEDLINE abstracts. The tool is provided as a UIMA component, which forms part of the in-built library of...

PhenoCHF is an annotated corpus consisting of documents belonging to two different text types (i.e., narrative reports from electronic health records (EHRs) and literature articles). It is manually annotated by medical doctors with detailed information relating to mentions of phenotype concepts a...

The corpus consists of 1000 MEDLINE abstracts. It is a subset of the original GENIA POS & term corpus, which was selected using the three MeSH terms human, blood cells and transcription factors. In each sentence, three types of information are annotated 1) biomedical terms are identified and assi...

The GENIA tagger analyzes English sentences and outputs the base forms, part-of-speech tags, chunk tags, and named entity tags. The tagger is specifically tuned for biomedical text such as MEDLINE abstracts.

Conta-me Histórias [http://contamehistorias.pt] is a temporal summarization framework of news articles that allows users to explore and revisit events in the past. To select relevant stories of different time-periods, we rely on YAKE! [http://yake.inesctec.pt] a keyword extraction algorithm devel...

Yake! (Campos et al. 2020) is a novel feature-based system for multi-lingual keyword extraction, which supports texts of different sizes, domain or languages. Unlike most of the systems, Yake! does not rely on dictionaries nor thesauri, neither is trained against any corpora. Instead, we follow a...